research
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2026
catena: Zotero References Inside Word Documents
Ties a Zotero collection to a manuscript, so references arrive in the document as real Zotero fields rather than typed by hand — and, when a reference comes from a…
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PaperTrail: Research Project Tracker, Idea to Publication
Where every manuscript stands, from the idea to the version of record. Workspaces with per-project membership, submissions with venues and outcomes, notes, authors, links, and the one number that matters…
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Grant Radar: Funding Opportunity Radar
Tracks funding calls for a research group — and keeps itself current. The table is curated by hand; a nightly link monitor flags dead links and changed pages, and a…
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Contrarian: Claim Verification Against the Literature
MCP suite that lets an AI assistant verify a factual claim against the scientific literature — with the opposite claim checked by default. Pro and steelmanned contra searches on PubMed,…
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LSSR: Living Systematic Scoping Review Platform
An entire scoping review in one tool — and a living one: every step re-runs on demand, updating results without redoing human work. Query building with LLM source-aware translation to…
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paper2md: PDF-to-Clean-Text Extraction Service
Turns a scientific PDF into clean, reflowed text using a full document-layout model — reading order reconstruction, stripped tables/headers/footnotes, references and back matter removable on request. Public no-login web page,…
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TopicTracker: PubMed Literature Analysis Platform
End-to-end pipeline for systematic PubMed literature analysis. Searches, downloads, and parses MEDLINE records; computes keyword, MeSH, author, and journal trends with normalization; generates interactive Bokeh charts; and builds keyword co-occurrence…
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Survey: Structured Survey Platform
Questionnaires for academic fieldwork, from the first draft to the export. Multi-page forms with per-page timing, balanced randomization into arms — counterbalanced presentation order included, so a crossover design needs…
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AutoCode: AI-Assisted Qualitative Coding Platform
Multi-user platform for qualitative analysis of text corpora. Two coding engines — an LLM (Claude) and an NLP dictionary — run over DOCX/Excel corpora with conventions, roles and groups; collaborative…
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2025
Research with Health Data: Ethical Issues, Risk Mitigation, and Data Management Practices
Health data offers immense potential for advancing medical research, but it also raises pressing ethical questions. This lecture and the following workshop explore the complex landscape of working with health-related…